1.4. Download and installation from source on Windows 10 64-bit (v. 1607)

1.4.1. Disclaimer

HORTON has been tested on Ubuntu 14.04 subsystem available on Windows 10 64-bit (after Windows 10 Anniversary Update i.e. v.1607). The Ubuntu 14.04 subsystem is not available to any Windows operating systems prior to the Windows 10 (v.1607) or 32-bit Windows systems. Cygwin based installation is not supported (although possible in theory).

1.4.2. Enable Bash on Windows 10

Provided you are using the appropriate version of Windows 10 (64-bit, after Window 10 Anniversary Update), go to “Settings > Update & Security > For Developers” (or alternatively search “Use Developer Features”) and activate “Developer Mode”. Then, go to “Programs and Features” and click “Turn Windows Features On or Off”. Check the box “Windows Subsystem for Linux (Beta)”. Restart Computer. Search “Bash” to open Ubuntu 14.04 subsystem terminal.

1.4.3. Check Ubuntu Version (Just In Case)

On bash,

lsb_release -a

It should be 14.04.4 LTS, but other versions may be available.

1.4.4. Packaged dependencies for building, installing and testing HORTON

In order to compile and test HORTON, you need to install relatively recent versions of the following programs/libraries:

With Ubuntu, most of these dependencies can be installed with a apt-get:

  • Ubuntu Linux 16.04:

    sudo apt-get install gcc g++ gfortran python-dev python-nose python-scipy cython \
            python-h5py python-matplotlib libxc-dev curl \
            python-pip

    Note that Ubuntu 16.04 does not have up-to-date packages for all dependencies. LibInt2 must be compiled manually as explained in From-source dependencies for building, installing and testing HORTON.

  • Ubuntu Linux 15.04 and 14.04:

    sudo apt-get install gcc g++ gfortran python-dev python-nose python-scipy cython \
            python-h5py python-matplotlib libxc-dev curl \
            python-pip
pip install --user --upgrade numpy

    Note that Ubuntu 15.04 and 14.04 do not have up-to-date packages for all dependencies. Hence, some are installed with PIP. LibInt2 must be compiled manually as explained in From-source dependencies for building, installing and testing HORTON.

1.4.5. Download HORTON

The latest stable source code release of HORTON can be downloaded here:

Choose a suitable directory, e.g. ~/build, download and unpack the archive

mkdir -p ~/build
cd ~/build
curl -kfLO https://github.com/theochem/horton/releases/download/2.1.0/horton-2.1.0.tar.gz
curl -kfLO https://github.com/theochem/horton/releases/download/2.1.0/horton-2.1.0.tar.gz.md5
md5sum horton-2.1.0.tar.gz | diff - horton-2.1.0.tar.gz.md5 -q || rm -fv horton-2.1.0.tar.gz
tar -xvzf horton-2.1.0.tar.gz
cd horton-2.1.0

The commands above will also check the integrity of the downloaded file. If the download failed, the partial or broken download will be removed. In case of faillure, it is usually sufficient just to retry.

1.4.6. From-source dependencies for building, installing and testing HORTON

If the package manager of your Linux distribution does not have the desired packages (or the right versions), you have to install them manually, e.g. download and execute an installer, or download and unpack a binary package. On HPC environments a compilation from scratch is recommended.

LibXC

The directory tools/qa of the HORTON source tree contains scripts to download and build LibXC, which will work on most systems:

./tools/qa/install_libxc-2.2.2.sh

This results in a LibXC library suitable for compiling HORTON. If this fails, consult your local Ubuntu guru to build LibXC. If you decided to make a custom compilation of LibXC, keep in mind that it is not reliable when using aggressive compiler optimization flags. For more info about LibXC, check the website: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc

LibInt2

The directory tools/qa of the HORTON source tree contains scripts to download and build LibInt2, which will work on most systems:

./tools/qa/install_libint-2.0.3.sh

The compilation of LibInt2 takes a few minutes and results in a library suitable for compiling HORTON. If this fails, consult your local Linux guru to build LibInt2. For more info about LibInt2, check the website: https://github.com/evaleev/libint

Python dependencies

In some cases, PIP, the Python package manager, may be a good choice to install the most recent versions of the Python packages in the list of dependencies. Examples are given above for Ubuntu and Fedora.

1.4.7. Build and Install HORTON

The regular build and install is done as follows:

./setup.py install --user

The setup.py script makes a reasonable attempt at configuring the compiler and linker settings for the LibXC and LibInt2 libraries. However, this does not work in all environments. In case of a failure, or if a configuration other than the default is desired, read Controlling dynamic/static linking against LibXC and LibInt2.

1.4.8. Runtime configuration

You need to set the following variable in ~/.bashrc to use HORTON:

export PATH=${HOME}/.local/bin:${PATH}

# If you used special link options for LibXC or LibInt2, something along
# the following lines may also be needed:
# export LD_LIBRARY_PATH=some_dir/with/shared_objects/${LD_LIBRARY_PATH}

If you run HORTON on a headless node, i.e. without an X server, you need to configure Matplotlib to use a backend that does not require a graphical user interface. (See http://matplotlib.org/faq/usage_faq.html#what-is-a-backend for more details on the Matplotlib backends.) This can be done by adding the following line to your matplotlibrc file:

backend: agg

This file is located in either ${HOME}/.matplotlib or ${HOME}/.config/matplotlib.

1.4.9. Test HORTON

To test if HORTON was installed properly and if it can be accessed from any directory, you should change to a directory outside of the source tree and call nosetests as follows:

(cd ~; nosetests -v horton)